ABOUT THIS RECORD

ID: MNEST033103
species: Rattus norvegicus
miRNA family: mir-9
source: miRBase, original name: rno-mir-3597-1 (MI0015430)

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE

pre-miRNA
GCGCAGTGTATGGGGTTATTTTTACTTTCGGTTATCTAGCTTTATGAAGACTCCACACCACTCATACAGCTAGATAACCAAAGATAACAACCAACCCCGC
CTCCTGGC

dot-bracket secondary structure
((.(((.(..(((((((.((.(((((((.((((((((((((.(((((..............))))).)))))))))))))))).))).))..))))))).
..))))))


SIMILARITIES

miRBase rno-mir-3597-1: 1e-56 PMRD no hits microPC no hits

UniProt no hits RFAM mir-9: 7e-24

Identical with: mml-mir-9-1 from miRBase (MNEST027645)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD

references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"