ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-9
source: miRBase, original name: rno-mir-3597-2 (MI0015439)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCGGTTATCTAGCTTTAT miRNA* ACAGCTAGATAACCAAAG mismatches: 1 bulges: 1 |
pre-miRNA
AGCACTCCTCGGTGATCTTGAAGGAGTTTTTACTTTCGGTTATCTAGCTTTATGAAGACCAATACACTCATACAGCTAGATAACCAAAGATAACAACTCG
CTTCCCTCACAAGGCTGT
dot-bracket secondary structure
.(((..(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).
))))..)))).))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
AGCACTCCTCGGTGATCTTGAAGGAGTTTTTACTTTCGGTTATCTAGCTTTATGAAGACCAATACACTCATACAGCTAGATAACCAAAGATAACAACTCG
CTTCCCTCACAAGGCTGT
dot-bracket secondary structure
.(((..(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).
))))..)))).))).)))
SIMILARITIES| miRBase rno-mir-3597-2: 1e-62 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 3e-17 |
Identical with: mml-mir-9-2 from miRBase (MNEST027646) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
