ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-7
source: miRBase, original name: bta-mir-7-2 (MI0010462)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTGTTGTT miRNA* CAACAAATCACAGTCTGCCATA mismatches: 1 bulges: 2 |
pre-miRNA
TGGATGTTGGTCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTGAATCGACAACAAATCACAGTCTGCCATATGGCACAGGCCATG
CCTCTACAG
dot-bracket secondary structure
((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).)
).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
TGGATGTTGGTCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTGAATCGACAACAAATCACAGTCTGCCATATGGCACAGGCCATG
CCTCTACAG
dot-bracket secondary structure
((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).)
).))))...
SIMILARITIES| miRBase ssc-mir-7: 6e-55 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 9e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
