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ABOUT THIS RECORD
ID:
MNEST033126
species:
Bos taurus
miRNA family:
mir-10
source:
miRBase, original name:
bta-mir-10a
(
MI0005007
)
Taxonomy by NCBI:
Bos taurus
Bos
Bovinae
Bovidae
Pecora
Ruminantia
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACCCTGTAGATCCGAATTTGTG
miRNA*
CAAATTCGTATCTAGGGGAATA
mismatches:
2
bulges:
1
View larger
pre-miRNA
GATCTGTCTGTCTTCTGTATA
TACCCTGTAGATCCGAATTTGTG
TAAGGAATTTTGTGATCA
CAAATTCGTATCTAGGGGAATA
TGTAGTTGACATAAAC
ACTCCGCTC
dot-bracket secondary structure
....(((.((((..(((((((
(.((((.(((((.((((((((((
................))
)))))))).))))))))).)))
)))))..))))...))
)........
SIMILARITIES
miRBase
age-mir-10a
:
6e-55
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-10: 2e-36
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned, Array, qRT-PCR
references
[
1
] Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M,
Mol Reprod Dev. 76:665-677(2009).
,
"Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach"
[
2
] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP,
Physiol Genomics. 29:35-43(2007).
,
"Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"