ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-19
source: miRBase, original name: bta-mir-19b-2 (MI0012209)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGCAAATCCATGCAAAACTGA miRNA* AGTTTTGCTGGTTTGCATTTCAGC mismatches: 0 bulges: 5 |
pre-miRNA
ACTGCTACTTACAGTTAGTTTTGCTGGTTTGCATTTCAGCGTGTGGATATATGGCTGTGCAAATCCATGCAAAACTGATTGTG
dot-bracket secondary structure
.........((((((((((((((((((((((((...((((((((....)))).)))))))))).))).)))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Long JE, Chen HX, Biochem Genet. 47:329-343(2009)., "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning"
ACTGCTACTTACAGTTAGTTTTGCTGGTTTGCATTTCAGCGTGTGGATATATGGCTGTGCAAATCCATGCAAAACTGATTGTG
dot-bracket secondary structure
.........((((((((((((((((((((((((...((((((((....)))).)))))))))).))).)))))))))))))))
SIMILARITIES| miRBase sla-mir-19b-2: 8e-26 PMRD no hits microPC no hits | UniProt no hits RFAM mir-19: 3e-16 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Long JE, Chen HX, Biochem Genet. 47:329-343(2009)., "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning"
