ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-26
source: miRBase, original name: bta-mir-26a-1 (MI0009784)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCAAGTAATCCAGGATAGGCT miRNA* CCTATTCTCGGTTACTTGCACG mismatches: 2 bulges: 0 |
pre-miRNA
AAGGCCGTGGCCTCGTTCAAGTAATCCAGGATAGGCTGTGCAGGTCCCAAGGGGCCTATTCTCGGTTACTTGCACGCGGACGCGGGCCTG
dot-bracket secondary structure
.((((((((.((.(((.(((((((((.((((((((((.(...(....)..).)))))))))).))))))))).))).)).))).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Long JE, Chen HX, Biochem Genet. 47:329-343(2009)., "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning"
[3] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
AAGGCCGTGGCCTCGTTCAAGTAATCCAGGATAGGCTGTGCAGGTCCCAAGGGGCCTATTCTCGGTTACTTGCACGCGGACGCGGGCCTG
dot-bracket secondary structure
.((((((((.((.(((.(((((((((.((((((((((.(...(....)..).)))))))))).))))))))).))).)).))).))))).
SIMILARITIES| miRBase bta-mir-26c: 4e-46 PMRD no hits microPC no hits | UniProt no hits RFAM mir-26: 1e-28 |
Identical with: bta-mir-26c from miRBase (MNEST033153) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Long JE, Chen HX, Biochem Genet. 47:329-343(2009)., "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning"
[3] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
