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ABOUT THIS RECORD
ID:
MNEST033159
species:
Bos taurus
miRNA family:
mir-29
source:
miRBase, original name:
bta-mir-29b-1
(
MI0010464
)
Taxonomy by NCBI:
Bos taurus
Bos
Bovinae
Bovidae
Pecora
Ruminantia
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAGCACCATTTGAAATCAGTGTT
miRNA*
GCTGGTTTCATATGGTGGTTTAGA
mismatches:
1
bulges:
3
View larger
pre-miRNA
CTTCAGGAA
GCTGGTTTCATATGGTGGTTTAGA
TTTAAATAGTGATTGTC
TAGCACCATTTGAAATCAGTGTT
CTTGGGGG
dot-bracket secondary structure
(((((((((
((((((((((.((((((..(((((
(.............)))
))))))))).)))))))))).))
))))))).
SIMILARITIES
miRBase
eca-mir-29b
:
9e-41
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-29: 2e-26
Identical with:
cfa-mir-29b-1
from miRBase (
MNEST026649
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned, Array, qRT-PCR
references
[
1
] Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M,
Mol Reprod Dev. 76:665-677(2009).
,
"Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach"
[
2
] Jin W, Grant JR, Stothard P, Moore SS, Guan LL,
BMC Mol Biol. 10:90(2009).
,
"Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[
3
] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP,
Physiol Genomics. 29:35-43(2007).
,
"Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
[
4
] Strozzi F, Mazza R, Malinverni R, Williams JL,
Anim Genet. 40:125(2009).
,
"Annotation of 390 bovine miRNA genes by sequence similarity with other species"