ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-30
source: miRBase, original name: bta-mir-30b (MI0004761)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGGGAGGTGGATGTTTACTT miRNA* GTAAACATCCTACACTCAGCT mismatches: 3 bulges: 2 |
pre-miRNA
CCAAGTTTTCAGTTCATGTAAACATCCTACACTCAGCTGTAACACACGAGTCGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGA
dot-bracket secondary structure
(((((...((((((...((((((((((.((.((((((((..((......))))))))))..))))))))))))...))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
[2] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
[3] Gu Z, Eleswarapu S, Jiang H, FEBS Lett. 581:981-988(2007)., "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland"
CCAAGTTTTCAGTTCATGTAAACATCCTACACTCAGCTGTAACACACGAGTCGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGA
dot-bracket secondary structure
(((((...((((((...((((((((((.((.((((((((..((......))))))))))..))))))))))))...))))))))))).
SIMILARITIES| miRBase bta-mir-30b: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-30: 1e-25 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
[2] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
[3] Gu Z, Eleswarapu S, Jiang H, FEBS Lett. 581:981-988(2007)., "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland"
