ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-30
source: miRBase, original name: bta-mir-30c (MI0005064)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAAACATCCTACACTCTCAGC miRNA* TGGGAGAGGGTTGTTTACTCC mismatches: 3 bulges: 2 |
pre-miRNA
CAGACTGTAACCATGCCGTAGTGTGTGTAAACATCCTACACTCTCAGCTGTGAGCTCGAGGTGGCTGGGAGAGGGTTGTTTACTCCTTCTGCCATGGAAA
ACGTC
dot-bracket secondary structure
..(((.((..(((((..((((...(.(((((((.(((...((((((((..(.........)..)))))))).))).))))))).)...)))))))))...
)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
CAGACTGTAACCATGCCGTAGTGTGTGTAAACATCCTACACTCTCAGCTGTGAGCTCGAGGTGGCTGGGAGAGGGTTGTTTACTCCTTCTGCCATGGAAA
ACGTC
dot-bracket secondary structure
..(((.((..(((((..((((...(.(((((((.(((...((((((((..(.........)..)))))))).))).))))))).)...)))))))))...
)))))
SIMILARITIES| miRBase eca-mir-30c: 1e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-30: 4e-19 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
