ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-34
source: miRBase, original name: bta-mir-34c (MI0005068)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCAGTGTAGTTAGCTGATTG miRNA* ATCACTAACCACACGGCCAGG mismatches: 3 bulges: 1 |
pre-miRNA
AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAATACCAATCACTAACCACACGGCCAGGTAAAAAGATT
dot-bracket secondary structure
(((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Array, qRT-PCR
references
[1] Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M, Mol Reprod Dev. 76:665-677(2009)., "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach"
[2] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAATACCAATCACTAACCACACGGCCAGGTAAAAAGATT
dot-bracket secondary structure
(((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))))
SIMILARITIES| miRBase eca-mir-34c: 2e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-34: 5e-30 |
Identical with: eca-mir-34c from miRBase (MNEST026987) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Array, qRT-PCR
references
[1] Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M, Mol Reprod Dev. 76:665-677(2009)., "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach"
[2] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
