ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-101
source: miRBase, original name: bta-mir-101 (MI0004735)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACAGTACTGTGATAACTGAA miRNA* CGGTTATCATGGTACCGATGCT mismatches: 1 bulges: 1 |
pre-miRNA
ACTGTCCTTTTTCGGTTATCATGGTACCGATGCTGTATATCTGAAAGGTACAGTACTGTGATAACTGAAGAATGGTGGT
dot-bracket secondary structure
((..((.((((((((((((((((((((.(.((((............))))).)))))))))))))))))))).))..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
[2] Gu Z, Eleswarapu S, Jiang H, FEBS Lett. 581:981-988(2007)., "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland"
ACTGTCCTTTTTCGGTTATCATGGTACCGATGCTGTATATCTGAAAGGTACAGTACTGTGATAACTGAAGAATGGTGGT
dot-bracket secondary structure
((..((.((((((((((((((((((((.(.((((............))))).)))))))))))))))))))).))..))
SIMILARITIES| miRBase mml-mir-101-2: 1e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-101: 1e-27 |
Identical with: mml-mir-101-2 from miRBase (MNEST027706) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
[2] Gu Z, Eleswarapu S, Jiang H, FEBS Lett. 581:981-988(2007)., "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland"
