ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-339
source: miRBase, original name: bta-mir-339 (MI0009806)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGTCCTCCAGGAGCTCAC miRNA* GCGCTCCTCGAGGCCAGAGCCC mismatches: 5 bulges: 0 |
pre-miRNA
GGGGCAGCCGCTGTCCCTGTCCTCCAGGAGCTCACTTGGTCCGGCCGTGCGCTCCTCGAGGCCAGAGCCCGTGTCTGC
dot-bracket secondary structure
...((((.(((.(.(.(((.((((.((((((.(((..((.....))))).)))))).)))).))).).).))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array, qRT-PCR, cloned
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M, Mol Reprod Dev. 76:665-677(2009)., "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach"
[3] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[4] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
GGGGCAGCCGCTGTCCCTGTCCTCCAGGAGCTCACTTGGTCCGGCCGTGCGCTCCTCGAGGCCAGAGCCCGTGTCTGC
dot-bracket secondary structure
...((((.(((.(.(.(((.((((.((((((.(((..((.....))))).)))))).)))).))).).).))).))))
SIMILARITIES| miRBase ssc-mir-339: 1e-18 PMRD no hits microPC no hits | UniProt no hits RFAM mir-339: 1e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array, qRT-PCR, cloned
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M, Mol Reprod Dev. 76:665-677(2009)., "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach"
[3] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[4] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
