ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-342
source: miRBase, original name: bta-mir-342 (MI0005059)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCACACAGAAATCGCACCCATCT miRNA* AGGGGTGCTATCTGTGGTTGAGGACA mismatches: 4 bulges: 5 |
pre-miRNA
TGGAAGCGGGTGCGAGGCGAGGGGTGCTATCTGTGGTTGAGGACACGGCAAATGAAACTGTCTCACACAGAAATCGCACCCATCTCCTCGGCCC
dot-bracket secondary structure
.......((((.(((((.((.((((((..((((((..((((.(((.(..........))))))))))))))....)))))).)).)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Long JE, Chen HX, Biochem Genet. 47:329-343(2009)., "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning"
[2] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
[3] Gu Z, Eleswarapu S, Jiang H, FEBS Lett. 581:981-988(2007)., "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland"
TGGAAGCGGGTGCGAGGCGAGGGGTGCTATCTGTGGTTGAGGACACGGCAAATGAAACTGTCTCACACAGAAATCGCACCCATCTCCTCGGCCC
dot-bracket secondary structure
.......((((.(((((.((.((((((..((((((..((((.(((.(..........))))))))))))))....)))))).)).)))))))))
SIMILARITIES| miRBase eca-mir-342: 0.00000000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-342: 1e-46 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Long JE, Chen HX, Biochem Genet. 47:329-343(2009)., "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning"
[2] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
[3] Gu Z, Eleswarapu S, Jiang H, FEBS Lett. 581:981-988(2007)., "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland"
