ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-346
source: miRBase, original name: bta-mir-346 (MI0009810)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCTGCCCGCATGCCTGCCTCT miRNA* AGGCAGGGGCTGGGCTTGCAGC mismatches: 4 bulges: 3 |
pre-miRNA
GGTCTCTGTGTTGGGCGTCTGTCTGCCCGCATGCCTGCCTCTCTGTTGCTCTGAAGGAGGCAGGGGCTGGGCTTGCAGCTGCCTGGGCAGAGCGG
dot-bracket secondary structure
.(.((((((.(..((((.((((..((((((...((((((((.((..........)))))))))).)).))))..)))).))))..))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
GGTCTCTGTGTTGGGCGTCTGTCTGCCCGCATGCCTGCCTCTCTGTTGCTCTGAAGGAGGCAGGGGCTGGGCTTGCAGCTGCCTGGGCAGAGCGG
dot-bracket secondary structure
.(.((((((.(..((((.((((..((((((...((((((((.((..........)))))))))).)).))))..)))).))))..))))))))..
SIMILARITIES| miRBase eca-mir-346: 1e-46 PMRD no hits microPC no hits | UniProt no hits RFAM mir-346: 1e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
