ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-365
source: miRBase, original name: bta-mir-365-2 (MI0009812)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATGCCCCTAAAAATCCTTAT miRNA* GAGGGACTTTCAGGGGCAGCTGT mismatches: 5 bulges: 1 |
pre-miRNA
AGAGTGCTCGAGGACAGCAAGAAAAATGAGGGACTTTCAGGGGCAGCTGTGTTTTCTGACTCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTTGCAG
TGTGCATCAGG
dot-bracket secondary structure
.((.(((.((......(((((((.((((((((..(((.(((((((((((.(((....))).)))).....))))))))))..)))))))).)))))))..
)).)))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
AGAGTGCTCGAGGACAGCAAGAAAAATGAGGGACTTTCAGGGGCAGCTGTGTTTTCTGACTCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTTGCAG
TGTGCATCAGG
dot-bracket secondary structure
.((.(((.((......(((((((.((((((((..(((.(((((((((((.(((....))).)))).....))))))))))..)))))))).)))))))..
)).)))))...
SIMILARITIES| miRBase mml-mir-365-2: 1e-53 PMRD no hits microPC no hits | UniProt no hits RFAM mir-365: 4e-41 |
Identical with: eca-mir-365 from miRBase (MNEST027146) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
