ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-368
source: miRBase, original name: bta-mir-376b (MI0010444)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCATAGAGGAAAATCCATGTT miRNA* GGTGGATATTCCTTCTATGTTTA mismatches: 3 bulges: 1 |
pre-miRNA
TTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTACGTGATTCATAGATAATCATAGAGGAAAATCCATGTTTTCAGTATCAAATGCT
dot-bracket secondary structure
...(((((((((.((((.((((((.(((((.(((((.((((..........).))).)))))))))).)))))).)))).)))))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
TTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTACGTGATTCATAGATAATCATAGAGGAAAATCCATGTTTTCAGTATCAAATGCT
dot-bracket secondary structure
...(((((((((.((((.((((((.(((((.(((((.((((..........).))).)))))))))).)))))).)))).)))))))))....
SIMILARITIES| miRBase cfa-mir-376b: 7e-48 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 7e-27 |
Identical with: oar-mir-376b from miRBase (MNEST033820) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
