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ABOUT THIS RECORD

ID: MNEST033352
species: Bos taurus
miRNA family: mir-154
source: miRBase, original name: bta-mir-377 (MI0009818)

Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCACACAAAGGCAACTTTTGT

miRNA*
AGAGGTTGCCCTTGGTGAATTC

mismatches: 1
bulges: 2

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pre-miRNA
TTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAACTTTTGTTTG

dot-bracket secondary structure
..((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).


SIMILARITIES
miRBase cfa-mir-377: 1e-33

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-154: 8e-32

Identical with: ptr-mir-377 from miRBase (MNEST030357)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"




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