ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-154
source: miRBase, original name: bta-mir-377 (MI0009818)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCACACAAAGGCAACTTTTGT miRNA* AGAGGTTGCCCTTGGTGAATTC mismatches: 1 bulges: 2 |
pre-miRNA
TTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAACTTTTGTTTG
dot-bracket secondary structure
..((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
TTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAACTTTTGTTTG
dot-bracket secondary structure
..((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).
SIMILARITIES| miRBase cfa-mir-377: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 8e-32 |
Identical with: ptr-mir-377 from miRBase (MNEST030357) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
