ABOUT THIS RECORDspecies: Bos taurus
source: miRBase, original name: bta-mir-409b (MI0015946)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGGTTCACCGAGCAACATTC miRNA* AAAGTTGCTCGGGTAACCTCTC mismatches: 3 bulges: 1 |
pre-miRNA
TGATACCGAAAAGGGGTTCACCGAGCAACATTCGTCGTCCAGATGCAAAGTTGCTCGGGTAACCTCTCCCCGCGTACCA
dot-bracket secondary structure
.(.(((((...(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))...)).))).).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
TGATACCGAAAAGGGGTTCACCGAGCAACATTCGTCGTCCAGATGCAAAGTTGCTCGGGTAACCTCTCCCCGCGTACCA
dot-bracket secondary structure
.(.(((((...(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))...)).))).).
SIMILARITIES| miRBase bta-mir-409a: 1e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 2e-32 |
Identical with: bta-mir-409a from miRBase (MNEST033361) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
