ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-322
source: miRBase, original name: bta-mir-424 (MI0012212)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCAGCAATTCATGTTTTGA miRNA* AAAACGTGAGGCGCTGCTATA mismatches: 3 bulges: 0 |
pre-miRNA
TCGTTGACTCCGAGGGGATGCAGCAGCAATTCATGTTTTGAAGTGCTTTAAACGGTTCAAAACGTGAGGCGCTGCTATACCCCCTTGCGAGGAAGT
dot-bracket secondary structure
.......((((((((((.((.((((((..(((((((((((((.((.......)).)))))))))))))..)))))).)).))))))).))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
TCGTTGACTCCGAGGGGATGCAGCAGCAATTCATGTTTTGAAGTGCTTTAAACGGTTCAAAACGTGAGGCGCTGCTATACCCCCTTGCGAGGAAGT
dot-bracket secondary structure
.......((((((((((.((.((((((..(((((((((((((.((.......)).)))))))))))))..)))))).)).))))))).))).....
SIMILARITIES| miRBase eca-mir-424: 2e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-322: 3e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
