ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-425
source: miRBase, original name: bta-mir-425 (MI0005047)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGACACGATCACTCCCGTTGA miRNA* ATCGGGAATGTCGTGTCCGCC mismatches: 5 bulges: 1 |
pre-miRNA
GAAAGCGCTTTGGAATGACACGATCACTCCCGTTGAGTGGGCACCCAAGAAGCCATCGGGAATGTCGTGTCCGCCCAGTGCTCTTTC
dot-bracket secondary structure
(((((.((.((((...(((((((.((.(((((.((..(((....)))......)).))))).)))))))))...)))).)).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
GAAAGCGCTTTGGAATGACACGATCACTCCCGTTGAGTGGGCACCCAAGAAGCCATCGGGAATGTCGTGTCCGCCCAGTGCTCTTTC
dot-bracket secondary structure
(((((.((.((((...(((((((.((.(((((.((..(((....)))......)).))))).)))))))))...)))).)).)))))
SIMILARITIES| miRBase bta-mir-425: 3e-44 PMRD no hits microPC no hits | UniProt no hits RFAM mir-425: 2e-39 |
Identical with: cfa-mir-425 from miRBase (MNEST026842) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP, Physiol Genomics. 29:35-43(2007)., "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
