ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-433
source: miRBase, original name: bta-mir-433 (MI0009832)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCATGATGGGCTCCTCGGTGT miRNA* TACGGTGAGCCTGTCATTGTTCAGAGAGGCTAGATCC mismatches: 5 bulges: 15 |
pre-miRNA
TGGCCGGGGAGAAGTACGGTGAGCCTGTCATTGTTCAGAGAGGCTAGATCCTCCTTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGC
GGCACCACACCATGAAGGCAGCCC
dot-bracket secondary structure
..(((..((((((...(((.((((((((((..(((......)))..((((((.(((...))).)))))).)))))))))).)))...)))))).(((.(.
(....).)))).....))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
TGGCCGGGGAGAAGTACGGTGAGCCTGTCATTGTTCAGAGAGGCTAGATCCTCCTTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGC
GGCACCACACCATGAAGGCAGCCC
dot-bracket secondary structure
..(((..((((((...(((.((((((((((..(((......)))..((((((.(((...))).)))))).)))))))))).)))...)))))).(((.(.
(....).)))).....))).....
SIMILARITIES| miRBase mmu-mir-433: 3e-57 PMRD no hits microPC no hits | UniProt sp|Q52QI2|RTL1_BOVIN: 2e-16 RFAM mir-433: 3e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Jin W, Grant JR, Stothard P, Moore SS, Guan LL, BMC Mol Biol. 10:90(2009)., "Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
