ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-448
source: miRBase, original name: bta-mir-448 (MI0009833)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCATATGTAGGATGTCCCAT miRNA* TGAACATCCTGCATAGTGCTGCC mismatches: 3 bulges: 1 |
pre-miRNA
GCGGGGAGGTTGAACATCCTGCATAGTGCTGCCAGGAAATCCCTATTTTATACTAAGGGGGGGTTGGCTGGTTGCATATGTAGGATGTCCCATCTCCCCA
CCCACATCATC
dot-bracket secondary structure
..((((((((.(.((((((((((((.(((.(((((..(((((((.(((......))).)))))))..))))).))))))))))))))).).)))))))).
...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
GCGGGGAGGTTGAACATCCTGCATAGTGCTGCCAGGAAATCCCTATTTTATACTAAGGGGGGGTTGGCTGGTTGCATATGTAGGATGTCCCATCTCCCCA
CCCACATCATC
dot-bracket secondary structure
..((((((((.(.((((((((((((.(((.(((((..(((((((.(((......))).)))))))..))))).))))))))))))))).).)))))))).
...........
SIMILARITIES| miRBase cfa-mir-448: 1e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-448: 5e-28 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
