ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-490
source: miRBase, original name: bta-mir-490 (MI0009845)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAACCTGGAGGACTCCATGCTG miRNA* CCATGGATCTCCAGGTGGGT mismatches: 2 bulges: 2 |
pre-miRNA
TGGAGACTTGCTGGTTTGGAAAGTTCATTGTTCGACACCATGGATCTCCAGGTGGGTCACGTTTAGAGATACACCAACCTGGAGGACTCCATGCTGTTGA
GCTGTTCACAAGCAGCGGACACTTCTA
dot-bracket secondary structure
.((((..((((((.(((((((........((((((((.(((((((((((((((.(((...(((....)))..))).)))))))))..)))))).))))))
))..))).))))))))))...))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
TGGAGACTTGCTGGTTTGGAAAGTTCATTGTTCGACACCATGGATCTCCAGGTGGGTCACGTTTAGAGATACACCAACCTGGAGGACTCCATGCTGTTGA
GCTGTTCACAAGCAGCGGACACTTCTA
dot-bracket secondary structure
.((((..((((((.(((((((........((((((((.(((((((((((((((.(((...(((....)))..))).)))))))))..)))))).))))))
))..))).))))))))))...))))..
SIMILARITIES| miRBase mml-mir-490: 2e-58 PMRD no hits microPC no hits | UniProt no hits RFAM mir-490: 8e-52 |
Identical with: eca-mir-490 from miRBase (MNEST027197) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
