ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-491
source: miRBase, original name: bta-mir-491 (MI0009846)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTGGGGAACCCTTCCATGAGG miRNA* TTATGCAAGATTCCCTTCTAC mismatches: 3 bulges: 1 |
pre-miRNA
TTGACTTAGCTGGGTAGTGGGGAACCCTTCCATGAGGAGTAGAACACTCCTTATGCAAGATTCCCTTCTACCTGACTGGGTTGG
dot-bracket secondary structure
(..((((((..((((((.((((((..(((.((((((((((.....)))))))))).))).)))))).))))))..))))))..)
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
TTGACTTAGCTGGGTAGTGGGGAACCCTTCCATGAGGAGTAGAACACTCCTTATGCAAGATTCCCTTCTACCTGACTGGGTTGG
dot-bracket secondary structure
(..((((((..((((((.((((((..(((.((((((((((.....)))))))))).))).)))))).))))))..))))))..)
SIMILARITIES| miRBase eca-mir-491: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-491: 2e-29 |
Identical with: ssc-mir-491 from miRBase (MNEST034109) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
