miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST033401
species:
Bos taurus
miRNA family:
mir-154
source:
miRBase, original name:
bta-mir-496
(
MI0009850
)
Taxonomy by NCBI:
Bos taurus
Bos
Bovinae
Bovidae
Pecora
Ruminantia
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGTATTACATGGCCAATCTC
miRNA*
GGTTGTCCATGGTGTGTTCATT
mismatches:
3
bulges:
0
View larger
pre-miRNA
CCGAGTCGGGGTACTCGAATGGA
GGTTGTCCATGGTGTGTTCATT
TTATTTATGA
TGAGTATTACATGGCCAATCTC
CTTTCAGTACTAAATTCTTCATG
GG
dot-bracket secondary structure
..((((...((((((.(((.(((
(((((.(((((..(((((((((
........))
)))))))..))))).)))))))
).)))))))))..))))......
..
SIMILARITIES
miRBase
eca-mir-496
:
2e-45
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-154: 5e-31
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Array, qRT-PCR
references
[
1
] Artzi S, Kiezun A, Shomron N,
BMC Bioinformatics. 9:39(2008).
,
"miRNAminer: a tool for homologous microRNA gene search"
[
2
] Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M,
Mol Reprod Dev. 76:665-677(2009).
,
"Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach"
[
3
] Strozzi F, Mazza R, Malinverni R, Williams JL,
Anim Genet. 40:125(2009).
,
"Annotation of 390 bovine miRNA genes by sequence similarity with other species"