ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-671
source: miRBase, original name: bta-mir-671 (MI0009887)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGAAGCCCTGGAGGGGCTGGAG miRNA* CCGGTTCTCAGGGCTCCACC mismatches: 1 bulges: 3 |
pre-miRNA
GCCGCCGACCTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTTTTCCGGGCCG
TGGAGCCAGGGCTGGTGC
dot-bracket secondary structure
..(((((.((((((.((((.((((((((.(((.((((((..(((((((((((.(((....)))..)))))))))))))))))))).)))))))).)))).
....))))))..))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
GCCGCCGACCTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTTTTCCGGGCCG
TGGAGCCAGGGCTGGTGC
dot-bracket secondary structure
..(((((.((((((.((((.((((((((.(((.((((((..(((((((((((.(((....)))..)))))))))))))))))))).)))))))).)))).
....))))))..))))).
SIMILARITIES| miRBase mml-mir-671: 4e-50 PMRD no hits microPC no hits | UniProt sp|Q9P2E5|CHPF2_HUMAN: 0.00003 RFAM mir-671: 1e-35 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
[2] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
