ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-1268
source: miRBase, original name: bta-mir-1777a (MI0011508)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGGGCGGTGGGGGGCGGG miRNA* GGCCTCTGGGCCCAGCC mismatches: 3 bulges: 3 |
pre-miRNA
GCATGGGGTTCCGAGTGGGGGCGGTGGGGGGCGGGTCTGAGCCGGCCTCTGGGCCCAGCCAGGGTCGCTCCGGGGT
dot-bracket secondary structure
((.(((((((((..((..((((..(.((((((.(((....))).)))))).))))).))..)))..))))))..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
GCATGGGGTTCCGAGTGGGGGCGGTGGGGGGCGGGTCTGAGCCGGCCTCTGGGCCCAGCCAGGGTCGCTCCGGGGT
dot-bracket secondary structure
((.(((((((((..((..((((..(.((((((.(((....))).)))))).))))).))..)))..))))))..))
SIMILARITIES| miRBase bta-mir-1777b: 0.0008 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
