ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-1839
source: miRBase, original name: bta-mir-1839 (MI0010473)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGTAGATAGAACAGGTCTTG miRNA* AGACCTACTTATCTACCAACA mismatches: 4 bulges: 1 |
pre-miRNA
AATGAAAAGGTAGATAGAACAGGTCTTGTGTGCAAAATGAATTCAAGACCTACTTATCTACCAACAGCAATG
dot-bracket secondary structure
........(((((((((...((((((((....(.....)....))))))))..)))))))))..........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
AATGAAAAGGTAGATAGAACAGGTCTTGTGTGCAAAATGAATTCAAGACCTACTTATCTACCAACAGCAATG
dot-bracket secondary structure
........(((((((((...((((((((....(.....)....))))))))..)))))))))..........
SIMILARITIES| miRBase ssc-mir-1839: 1e-27 PMRD no hits microPC no hits | UniProt no hits RFAM SCARNA15: 2e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Strozzi F, Mazza R, Malinverni R, Williams JL, Anim Genet. 40:125(2009)., "Annotation of 390 bovine miRNA genes by sequence similarity with other species"
