ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-2284
source: miRBase, original name: bta-mir-2312 (MI0011329)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAACCTGAACGAACTTTTC miRNA* ACAGTTTGTCTGGGTTATTCT mismatches: 4 bulges: 1 |
pre-miRNA
TTGGGCTGGCCAAACAGTTTGTCTGGGTTATTCTGTAACTTGGAAAACCTGAACGAACTTTTCGGCCCACCAA
dot-bracket secondary structure
.(((...((((.((.(((((((..(((((.(((((.....))))))))))..))))))).)).))))..))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
TTGGGCTGGCCAAACAGTTTGTCTGGGTTATTCTGTAACTTGGAAAACCTGAACGAACTTTTCGGCCCACCAA
dot-bracket secondary structure
.(((...((((.((.(((((((..(((((.(((((.....))))))))))..))))))).)).))))..))).
SIMILARITIES| miRBase bta-mir-2284j: 5e-36 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: bta-mir-2284j from miRBase (MNEST033515) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
