ABOUT THIS RECORDspecies: Bos taurus
miRNA family: miR-2390
source: miRBase, original name: bta-mir-2390 (MI0011430)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTGTGTGTTTTTGTTTTCC miRNA* AGAGAAAGAGCAATTTCAGGTG mismatches: 4 bulges: 2 |
pre-miRNA
TGTGCTTTCTGTTGTGTGTTTTTGTTTTCCCTACTCGTATGGAGAGAAAGAGCAATTTCAGGTGAAAGGATA
dot-bracket secondary structure
(((.(((((..(((..(((((((.((((((.((....)).)))))).)))))))....)))..))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
TGTGCTTTCTGTTGTGTGTTTTTGTTTTCCCTACTCGTATGGAGAGAAAGAGCAATTTCAGGTGAAAGGATA
dot-bracket secondary structure
(((.(((((..(((..(((((((.((((((.((....)).)))))).)))))))....)))..))))).)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ, PLoS One. 4:e6349(2009)., "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
