ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-2887
source: miRBase, original name: bta-mir-2887-1 (MI0013060)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGGACCGGGGTCCGGTGCG miRNA* TCCCGGGACACGGGGCGCGGC mismatches: 7 bulges: 1 |
pre-miRNA
CGTCGGGACCGGGGTCCGGTGCGGAGAGCCCTTCGTCCCGGGACACGGGGCGCGGCC
dot-bracket secondary structure
.((((.(.(((.(..((((..(((((....)))))..))))..).)))..).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
CGTCGGGACCGGGGTCCGGTGCGGAGAGCCCTTCGTCCCGGGACACGGGGCGCGGCC
dot-bracket secondary structure
.((((.(.(((.(..((((..(((((....)))))..))))..).)))..).)))).
SIMILARITIES| miRBase bta-mir-2887-2: 1e-26 PMRD no hits microPC no hits | UniProt no hits RFAM mir-689: 0.00001 |
Identical with: bta-mir-2887-2 from miRBase (MNEST033761) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
