ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-3578
source: miRBase, original name: bta-mir-3578 (MI0015945)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCCACCACGAACAACTTC miRNA* TGTTGTCCGTGAATGATTCGT mismatches: 7 bulges: 0 |
pre-miRNA
TTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCATAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCACA
dot-bracket secondary structure
..((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....))).)))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
TTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCATAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCACA
dot-bracket secondary structure
..((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....))).)))))))..
SIMILARITIES| miRBase oar-mir-382: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 7e-39 |
Identical with: cfa-mir-382 from miRBase (MNEST026833) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
