ABOUT THIS RECORDspecies: Bos taurus
source: miRBase, original name: bta-mir-3600 (MI0015943)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGTTCTTCAACTGGCAGCTT miRNA* GCTTGCCACTGAAGAACTACTG mismatches: 3 bulges: 2 |
pre-miRNA
CAGAGGGCAACAGTTCTTCAACTGGCAGCTTTAGCTGGGTCAGGACATAAAGCTTGCCACTGAAGAACTACTGCGGCTCAG
dot-bracket secondary structure
..(((.(((..(((((((((..(((((((((((.((......))...)))))).))))).)))))))))..)))..)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
CAGAGGGCAACAGTTCTTCAACTGGCAGCTTTAGCTGGGTCAGGACATAAAGCTTGCCACTGAAGAACTACTGCGGCTCAG
dot-bracket secondary structure
..(((.(((..(((((((((..(((((((((((.((......))...)))))).))))).)))))))))..)))..)))..
SIMILARITIES| miRBase eca-mir-22: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-22: 2e-39 |
Identical with: mne-mir-22 from miRBase (MNEST028181) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
