ABOUT THIS RECORDspecies: Bos taurus
source: miRBase, original name: bta-mir-3601 (MI0015947)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCGTGACATGATGATCCCCGA miRNA* AGTTATCAATCTGTCACAAGTGC mismatches: 5 bulges: 2 |
pre-miRNA
CCCAGACCTTTCAGTTATCAATCTGTCACAAGTGCACAGTGGTATCTCGTGACATGATGATCCCCGAGATGTCTGAGG
dot-bracket secondary structure
(((((((.((((.(..((((.((((((((.(((((......))).)).)))))).))))))..).)))).))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
CCCAGACCTTTCAGTTATCAATCTGTCACAAGTGCACAGTGGTATCTCGTGACATGATGATCCCCGAGATGTCTGAGG
dot-bracket secondary structure
(((((((.((((.(..((((.((((((((.(((((......))).)).)))))).))))))..).)))).))))).))
SIMILARITIES| miRBase eca-mir-542: 5e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-542: 6e-33 |
Identical with: eca-mir-542 from miRBase (MNEST027227) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
