ABOUT THIS RECORDspecies: Bos taurus
miRNA family: mir-3604
source: miRBase, original name: bta-mir-3604-1 (MI0015950)
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAACCAATGTGCAGACTACTGT miRNA* GGTAGTCTGAACACTGGGTTGG mismatches: 7 bulges: 0 |
pre-miRNA
CCCAGCCTAACCAATGTGCAGACTACTGTACACATTCAGAGCCCCCTGAACAGGTAGTCTGAACACTGGGTTGGCGGG
dot-bracket secondary structure
(((.(((...(((.(((.(((((((((.......(((((......)))))..))))))))).))).)))...))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
CCCAGCCTAACCAATGTGCAGACTACTGTACACATTCAGAGCCCCCTGAACAGGTAGTCTGAACACTGGGTTGGCGGG
dot-bracket secondary structure
(((.(((...(((.(((.(((((((((.......(((((......)))))..))))))))).))).)))...))))))
SIMILARITIES| miRBase ssc-mir-199a-2: 5e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-199: 1e-30 |
Identical with: ssc-mir-199a-2 from miRBase (MNEST034031) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D, BMC Genomics. 10:443(2009)., "Identification and characterization of miRNAs expressed in the bovine ovary"
