ABOUT THIS RECORDspecies: Ovis aries
miRNA family: mir-127
source: miRBase, original name: oar-mir-127 (MI0001521)
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCGGATCCGTCTGAGCTTGGCT miRNA* CTGAAGCTCAGAGGGCTCTGATTC mismatches: 3 bulges: 1 |
pre-miRNA
GCTTTGATCACTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGGAAGTCTCCTCATCT
GCTTCCTTCGGGTT
dot-bracket secondary structure
((..(((..(((...(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).))))))....)))...
))..((....))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR
references
[1] Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C, Curr Biol. 15:743-749(2005)., "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus"
GCTTTGATCACTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGGAAGTCTCCTCATCT
GCTTCCTTCGGGTT
dot-bracket secondary structure
((..(((..(((...(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).))))))....)))...
))..((....))..
SIMILARITIES| miRBase mml-mir-127: 6e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-127: 1e-34 |
Identical with: bta-mir-127 from miRBase (MNEST033205) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR
references
[1] Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C, Curr Biol. 15:743-749(2005)., "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus"
