ABOUT THIS RECORDspecies: Ovis aries
miRNA family: mir-154
source: miRBase, original name: oar-mir-154b (MI0016953)
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATCATACATGGTTGACCTTTTT miRNA* AGAGGTCTTCCATGGTGCATTCG mismatches: 2 bulges: 2 |
pre-miRNA
AGAGATACTTGGTGGTACTTGAAGAGAGGTCTTCCATGGTGCATTCGCTTTATTCTTTGACGAATCATACATGGTTGACCTTTTTTTAGGTATCAAATCT
GGCCTTGAA
dot-bracket secondary structure
.(((........(((((((((((((((((((..((((((((.((((((..........).)))))))).)))))..))))))))))))))))))).....
...)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
AGAGATACTTGGTGGTACTTGAAGAGAGGTCTTCCATGGTGCATTCGCTTTATTCTTTGACGAATCATACATGGTTGACCTTTTTTTAGGTATCAAATCT
GGCCTTGAA
dot-bracket secondary structure
.(((........(((((((((((((((((((..((((((((.((((((..........).)))))))).)))))..))))))))))))))))))).....
...)))...
SIMILARITIES| miRBase oar-mir-154b: 9e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 5e-28 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
