ABOUT THIS RECORDspecies: Ovis aries
miRNA family: mir-412
source: miRBase, original name: oar-mir-412 (MI0016959)
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCACCTGGGCCACTAGCT miRNA* ATGGTCGACCAGTTGGAAAGTA mismatches: 4 bulges: 2 |
pre-miRNA
AGGGAAGAACGTCAGTACCAGCAACCACTCTGGGGTACAGGACGGATGGTCGACCAGTTGGAAAGTAATTGTTTCTAATGTACTTCACCTGGGCCACTAG
CTGTCCGTACCCACTGCAGCCTGC
dot-bracket secondary structure
.(((......(.((((.((((........))))(((((.((((((.((((.(.((((.(((..((((((((....)))).))))))).)))).).)))).
))))))))))).)))))..)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
AGGGAAGAACGTCAGTACCAGCAACCACTCTGGGGTACAGGACGGATGGTCGACCAGTTGGAAAGTAATTGTTTCTAATGTACTTCACCTGGGCCACTAG
CTGTCCGTACCCACTGCAGCCTGC
dot-bracket secondary structure
.(((......(.((((.((((........))))(((((.((((((.((((.(.((((.(((..((((((((....)))).))))))).)))).).)))).
))))))))))).)))))..)))..
SIMILARITIES| miRBase oar-mir-412: 3e-66 PMRD no hits microPC no hits | UniProt no hits RFAM mir-412: 2e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
