ABOUT THIS RECORDspecies: Ovis aries
miRNA family: mir-431
source: miRBase, original name: oar-mir-431 (MI0001520)
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCTTGCAGGCCGTCATGCAGG miRNA* GTCATGCAGGCCACACTGACGGAAACGTTGCAGGTCGTC mismatches: 11 bulges: 16 |
pre-miRNA
CGTCCTGCGAGGTGTCTTGCAGGCCGTCATGCAGGCCACACTGACGGAAACGTTGCAGGTCGTCTTGCAGGGCGTCTCGCAAGACGACACA
dot-bracket secondary structure
.((((((((((..(.(((((.((((........)))).....((((....))))))))).)..))))))))))(((((....)).)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR
references
[1] Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C, Curr Biol. 15:743-749(2005)., "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus"
CGTCCTGCGAGGTGTCTTGCAGGCCGTCATGCAGGCCACACTGACGGAAACGTTGCAGGTCGTCTTGCAGGGCGTCTCGCAAGACGACACA
dot-bracket secondary structure
.((((((((((..(.(((((.((((........)))).....((((....))))))))).)..))))))))))(((((....)).)))...
SIMILARITIES| miRBase bta-mir-431: 4e-43 PMRD no hits microPC no hits | UniProt sp|Q52QI2|RTL1_BOVIN: 0.000000001 RFAM mir-431: 3e-35 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR
references
[1] Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C, Curr Biol. 15:743-749(2005)., "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus"
