ABOUT THIS RECORDspecies: Ovis aries
miRNA family: mir-433
source: miRBase, original name: oar-mir-433 (MI0016914)
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACGGTGAGCCTGTCATTGTTCA miRNA* GGCTAGATCCTCCTTGTTGAGAAGGATCATGATGGGCTCCTCGGTGT mismatches: 7 bulges: 24 |
pre-miRNA
ACCCAGTGGCCGGGGAGAAGTACGGTGAGCCTGTCATTGTTCAGAGAGGCTAGATCCTCCTTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCA
GGTAGCGGCACCAC
dot-bracket secondary structure
..((.((.(((..((((((...(((.((((((((((..(((......)))..((((((.(((...))).)))))).)))))))))).)))...)))))).
))).))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
ACCCAGTGGCCGGGGAGAAGTACGGTGAGCCTGTCATTGTTCAGAGAGGCTAGATCCTCCTTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCA
GGTAGCGGCACCAC
dot-bracket secondary structure
..((.((.(((..((((((...(((.((((((((((..(((......)))..((((((.(((...))).)))))).)))))))))).)))...)))))).
))).))))......
SIMILARITIES| miRBase oar-mir-433: 3e-60 PMRD no hits microPC no hits | UniProt sp|Q52QI2|RTL1_BOVIN: 5e-16 RFAM mir-433: 2e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
