ABOUT THIS RECORDspecies: Ovis aries
miRNA family: mir-485
source: miRBase, original name: oar-mir-485 (MI0016950)
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCATACACGGCTCTCCTCTCT miRNA* AGAGGCTGGCCGTGATGAATTC mismatches: 2 bulges: 2 |
pre-miRNA
CAAGTGTCCACTTATGGTACTTGAAGAGAGGCTGGCCGTGATGAATTCGATTCATCAAAGCGAGTCATACACGGCTCTCCTCTCTTTTAGTGTCAAATTC
TGCCTCGGAGG
dot-bracket secondary structure
.((((....)))).((..(((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))..))..(((
((...))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
CAAGTGTCCACTTATGGTACTTGAAGAGAGGCTGGCCGTGATGAATTCGATTCATCAAAGCGAGTCATACACGGCTCTCCTCTCTTTTAGTGTCAAATTC
TGCCTCGGAGG
dot-bracket secondary structure
.((((....)))).((..(((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))..))..(((
((...))))).
SIMILARITIES| miRBase oar-mir-485: 2e-58 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 4e-38 |
Identical with: cfa-mir-485 from miRBase (MNEST026855) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
