ABOUT THIS RECORDspecies: Ovis aries
miRNA family: mir-544
source: miRBase, original name: oar-mir-544 (MI0016943)
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTCTGCATTTTTAGCAAGTT miRNA* CTTGTTAAAAGGCAGATTCT mismatches: 2 bulges: 1 |
pre-miRNA
TCAGATTTACATCACCTAGGGATCTTGTTAAAAGGCAGATTCTGATTCAGGGACCAAGATTCTGCATTTTTAGCAAGTTCCCAAGTCATGCTAATGCTTC
T
dot-bracket secondary structure
....(((..(((.((...((((.((((((((((((((((.(((..((....))...))).))))).))))))))))).))))..)).)))..))).....
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
TCAGATTTACATCACCTAGGGATCTTGTTAAAAGGCAGATTCTGATTCAGGGACCAAGATTCTGCATTTTTAGCAAGTTCCCAAGTCATGCTAATGCTTC
T
dot-bracket secondary structure
....(((..(((.((...((((.((((((((((((((((.(((..((....))...))).))))).))))))))))).))))..)).)))..))).....
.
SIMILARITIES| miRBase oar-mir-544: 1e-52 PMRD no hits microPC no hits | UniProt no hits RFAM mir-544: 5e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
