ABOUT THIS RECORDspecies: Ovis aries
source: miRBase, original name: oar-mir-3955 (MI0016916)
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGATTTTAGTCCATCATAG miRNA* TTGATGGCTGATCCTCTCACT mismatches: 5 bulges: 2 |
pre-miRNA
ATGGTTTGAAAGTATGGGATACATTTGATGGCTGATCCTCTCACTACTTTATACCTTGGGTAGTGGGATTTTAGTCCATCATAGAGCAAGCAGATTTGTT
TTCACC
dot-bracket secondary structure
...(((((...((((...))))...((((((((((...(((((((((((........)))))))))))..)))).)))))).....))))).........
......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
ATGGTTTGAAAGTATGGGATACATTTGATGGCTGATCCTCTCACTACTTTATACCTTGGGTAGTGGGATTTTAGTCCATCATAGAGCAAGCAGATTTGTT
TTCACC
dot-bracket secondary structure
...(((((...((((...))))...((((((((((...(((((((((((........)))))))))))..)))).)))))).....))))).........
......
SIMILARITIES| miRBase oar-mir-3955: 2e-55 PMRD no hits microPC no hits | UniProt no hits RFAM SNORA79: 1e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
