ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: let-7
source: miRBase, original name: ssc-let-7a-2 (MI0017984)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGTT miRNA* CTATACAATCTACTGTCTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
CACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCCTAACGTGAT
dot-bracket secondary structure
(((..(((((.(((..((((((((((((((((...(((.....))).((....))....))))))))))))))))..))))))))..)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Li G, Li Y, Li X, Ning X, Li M, Yang G, J Cell Biochem. 112:1318-1328(2011)., "MicroRNA identity and abundance in developing swine adipose tissue as determined by solexa sequencing"
CACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCCTAACGTGAT
dot-bracket secondary structure
(((..(((((.(((..((((((((((((((((...(((.....))).((....))....))))))))))))))))..))))))))..)))..
SIMILARITIES| miRBase mmu-let-7a-1: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 7e-36 |
Identical with: ppy-let-7a-1 from miRBase (MNEST030731) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Li G, Li Y, Li X, Ning X, Li M, Yang G, J Cell Biochem. 112:1318-1328(2011)., "MicroRNA identity and abundance in developing swine adipose tissue as determined by solexa sequencing"
