ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-10
source: miRBase, original name: ssc-mir-10a (MI0013101)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCCTGTAGATCCGAATTTGT miRNA* AAATTCGTATCTAGGGGAATA mismatches: 2 bulges: 1 |
pre-miRNA
TCTGTATATACCCTGTAGATCCGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATCTAGGGGAATATGTAGTTGA
dot-bracket secondary structure
.((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
TCTGTATATACCCTGTAGATCCGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATCTAGGGGAATATGTAGTTGA
dot-bracket secondary structure
.((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))....
SIMILARITIES| miRBase eca-mir-10a: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 4e-34 |
Identical with: mml-mir-10a from miRBase (MNEST027648) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
