ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-99
source: miRBase, original name: ssc-mir-99b (MI0007077)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCCGTAGAACCGACCTTGCG miRNA* CAAGCTCGTGTCTGTGGGTCCG mismatches: 5 bulges: 0 |
pre-miRNA
GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC
dot-bracket secondary structure
(((((..(((((((((..(((.((((.(((((....))).).).)))).)))..)))))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Podolska A, Cirera S, Unpublished.,
[2] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC
dot-bracket secondary structure
(((((..(((((((((..(((.((((.(((((....))).).).)))).)))..)))))))))..)))))
SIMILARITIES| miRBase eca-mir-99b: 3e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 5e-33 |
Identical with: mmu-mir-99b from miRBase (MNEST031826) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Podolska A, Cirera S, Unpublished.,
[2] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
