ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-124
source: miRBase, original name: ssc-mir-124a-1 (MI0010680)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGGCACGCGGTGAATGCCA miRNA* GTGTTCACAGCGGACCTTGAT mismatches: 5 bulges: 0 |
pre-miRNA
TCAAGACCAGACTCTGCCCTCCGTGTTCACAGCGGACCTTGATTTAATGTCATACAATTAAGGCACGCGGTGAATGCCAAGAGCGGAGCCTACGGCTGCA
CTTGA
dot-bracket secondary structure
(((((..(((.((((((.((..((((((((.(((..((((((((...........))))))))..))).))))))))..)).)))))).......)))..
)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R, BMC Genomics. 10:65(2009)., "Cloning, characterization and expression analysis of porcine microRNAs"
TCAAGACCAGACTCTGCCCTCCGTGTTCACAGCGGACCTTGATTTAATGTCATACAATTAAGGCACGCGGTGAATGCCAAGAGCGGAGCCTACGGCTGCA
CTTGA
dot-bracket secondary structure
(((((..(((.((((((.((..((((((((.(((..((((((((...........))))))))..))).))))))))..)).)))))).......)))..
)))))
SIMILARITIES| miRBase mml-mir-124a-1: 2e-48 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 9e-39 |
Identical with: eca-mir-124-2 from miRBase (MNEST027008) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R, BMC Genomics. 10:65(2009)., "Cloning, characterization and expression analysis of porcine microRNAs"
