ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-125
source: miRBase, original name: ssc-mir-125b-1 (MI0013172)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGAGACCCTAACTTGTGA miRNA* ACGGGTTAGGCTCTTGGGAGCT mismatches: 6 bulges: 0 |
pre-miRNA
CCTCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGAGCCGTG
dot-bracket secondary structure
.(((.(((..((..(((.(((((((((((..(((((.....))))).))))))))))).)))..))..))).))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
CCTCTCAGTCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGCTGCGAGCCGTG
dot-bracket secondary structure
.(((.(((..((..(((.(((((((((((..(((((.....))))).))))))))))).)))..))..))).))).....
SIMILARITIES| miRBase age-mir-125b-1: 9e-38 PMRD no hits microPC no hits | UniProt no hits RFAM lin-4: 9e-29 |
Identical with: cfa-mir-125b-1 from miRBase (MNEST026690) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
