ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-126
source: miRBase, original name: ssc-mir-126 (MI0016619)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGTACCGTGAGTAATAATGCG miRNA* ACATTATTACTTTTGGTACGCGC mismatches: 3 bulges: 1 |
pre-miRNA
CGACGGGACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCTGTCG
dot-bracket secondary structure
(((((((.(((((((((((.(((((((.(...(((....)))..).))))))).)))))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Cho IS, Kim J, Seo HY, Lim do H, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS, Mol Biol Rep. 37:3567-3574(2010)., "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
CGACGGGACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCTGTCG
dot-bracket secondary structure
(((((((.(((((((((((.(((((((.(...(((....)))..).))))))).)))))))))))).))))))
SIMILARITIES| miRBase bta-mir-126: 7e-35 PMRD no hits microPC no hits | UniProt no hits RFAM mir-126: 1e-27 |
Identical with: cfa-mir-126 from miRBase (MNEST026692) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Cho IS, Kim J, Seo HY, Lim do H, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS, Mol Biol Rep. 37:3567-3574(2010)., "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
